Immigration officer Alipio Fernandez Jr. identified the suspect as Takamashi Tatsuhiko.
In a statement, Fernandez said Tatsuhiko, 44, has been on the wanted list of the Interpol and the Tokyo police since March 11 this year.
A Japanese court has issued an arrest warrant against the suspect, who has been charged with the crime of destruction of property.
The Tokyo police has tagged Tatsuhiko as a former member of the Boryokudan Gang, a faction of the Yakuza criminal syndicate, Fernandez said.
The bureau said Tatsuhikos Filipino live-in partner has also filed a separate deportation complaint against him for being an undesirable alien.
The woman claimed Tatsuhiko operated an unregistered business in Manila called Tsudoi Construction Co. He also allegedly carried an unlicensed gun which he would fire indiscriminately in their neighborhood in Parañaque City and would boast of his supposed connections with local authorities and the police.
The BI board of commissioners is set to issue a summary deportation order against Tatsuhiko, Fernandez said. Nikko Dizon